PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019387-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 313aa    MW: 34823 Da    PI: 7.5356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019387-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29155214159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaed ++++ tYegeHnh+
  NNU_019387-RA 155 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDRTLLVATYEGEHNHP 214
                    58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-29147216IPR003657WRKY domain
PROSITE profilePS5081126.578150216IPR003657WRKY domain
SuperFamilySSF1182903.66E-25152216IPR003657WRKY domain
SMARTSM007748.7E-33155215IPR003657WRKY domain
PfamPF031065.9E-24156214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MESTWLDTSL SFDLNVNPHR HLDETPKEEV LYTDFLDMGR QQSVNEDASV LVEKLNRMNA  60
ENKKLTELLT VMCENYQALQ TQLMDLMKRN NETNFPASKK RKAESMDANN QTGINGPAES  120
SSSDEDSCKK FREDIKTKIS RVYVRIDASD TNLVVKDGYQ WRKYGQKVTR DNPSPRAYFK  180
CSFAPSCPVK KKVQRSAEDR TLLVATYEGE HNHPHPSQAE TALGSSHGVT IGSVPCSASI  240
SSSNSGPTIT LDLTQPGLSN SVKKPNEETK PPAFKQFLVE QMASSLTKDP SFTAALAAAI  300
SGKIQQHSTV QKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-211542161374WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9833321e-30HG983332.1 Humulus lupulus mRNA for WRKY transcription factor (Wrky2 gene), clone 3320.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275778.10.0PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH71e-95WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLA0A140H8T31e-124A0A140H8T3_MANES; WRKY transcription factor 79
STRINGVIT_09s0018g00240.t011e-120(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-91WRKY DNA-binding protein 40